Stem-loop ggo-mir-541

Accession

MI0039827

Description

Gorilla gorilla ggo-mir-541 precursor miRNA

Literature search

2 open access papers mention ggo-mir-541
(26 sentences)

Sequence

597 reads, 48.0 reads per million, 4 experiments

AAAGGAUUCUGCUGUCGGUCCCAcuccaaaguucacagaAUGGGUGGUGGCACAGAAUCCGGAcu
...((((((((.(((((...((((((....((((...))))))))))))))))))))))).....

Structure

--AAA        C     GUC      caaa    a 
     GGAUUCUG UGUCG   CCAcuc    guuc  
     |||||||| |||||   ||||||    |||| c
     CCUAAGAC ACGGU   GGUGGG    UAag  
ucAGG        -     ---      ----    a 

Annotation confidence High

Genome context

chr14: 85087564-85087628 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ggo-mir-541

Mature ggo-miR-541-5p

• Accession: MIMAT0049115
• Description: Gorilla gorilla ggo-miR-541-5p mature miRNA
• Sequence: 1 - AAAGGAUUCUGCUGUCGGUCCCA - 23
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-541-3p

• Accession: MIMAT0061353
• Description: Gorilla gorilla ggo-miR-541-3p mature miRNA
• Sequence: 40 - AUGGGUGGUGGCACAGAAUCCGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596