Stem-loop cfa-mir-376a-1

Accession

MI0008143

Description

Canis lupus familiaris cfa-mir-376a-1 precursor miRNA

Literature search

1 open access papers mention cfa-mir-376a-1
(2 sentences)

Sequence

23783 reads, 59.0 reads per million, 65 experiments

GUAGAUUCUCCUUCUAUGAGUacauuauuuaugauuaAUCAUAGAGGAAAAUCCACGU
((.((((.((((.((((((...(((.....))).....)))))))))).)))).))..

Structure

--  A    C    U      --GUa   u 
  GU GAUU UCCU CUAUGA     cau a
  || |||| |||| ||||||     ||| u
  CA CUAA AGGA GAUACU     gua u
UG  C    A    -      Aauua   u 

Annotation confidence High

Genome context

8: 69552969-69553026 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-376a-1

Mature cfa-miR-376a-1-5p

• Accession: MIMAT0051842
• Description: Canis lupus familiaris cfa-miR-376a-1-5p mature miRNA
• Sequence: 1 - GUAGAUUCUCCUUCUAUGAGU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-376a-3p

• Accession: MIMAT0006722
• Description: Canis lupus familiaris cfa-miR-376a-3p mature miRNA
• Sequence: 38 - AUCAUAGAGGAAAAUCCACGU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415