Stem-loop tch-mir-342

Accession

MI0031145

Description

Tupaia chinensis tch-mir-342 precursor miRNA

Sequence

184213 reads, 691.0 reads per million, 30 experiments

AGGGGUGCUAUCUGUGACUGAGggcauggucagcggauugUCUCACACAGAAAUCGCACCCGU
..((((((..((((((..(((((.((..(((....))))))))))))))))....))))))..

Structure

AG      --UA      AC     g  ug   a 
  GGGUGC    UCUGUG  UGAGg ca  guc g
  ||||||    ||||||  ||||| ||  |||  
  CCCACG    AGACAC  ACUCU gu  uag c
UG      CUAA      --     -  --   g 

Annotation confidence High

Genome context

KB321140.1: 3992730-3992792 [+]

Mature tch-miR-342-5p

• Accession: MIMAT0059011
• Description: Tupaia chinensis tch-miR-342-5p mature miRNA
• Sequence: 1 - AGGGGUGCUAUCUGUGACUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature tch-miR-342-3p

• Accession: MIMAT0036487
• Description: Tupaia chinensis tch-miR-342-3p mature miRNA
• Sequence: 41 - UCUCACACAGAAAUCGCACCCGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254