Stem-loop tch-mir-29a

Accession

MI0031169

Description

Tupaia chinensis tch-mir-29a precursor miRNA

Literature search

1 open access papers mention tch-mir-29a
(2 sentences)

Sequence

3065557 reads, 12802.0 reads per million, 30 experiments

ACUGAUUUCUUUUGGUGUUCAGAgucaauauaauuuucUAGCACCAUCUGAAAUCGGUU
(((((((((...(((((((.((((...........)))))))))))...))))))))).

Structure

-         UUU       C    ucaa 
 ACUGAUUUC   UGGUGUU AGAg    u
 |||||||||   ||||||| ||||    a
 UGGCUAAAG   ACCACGA Ucuu    u
U         UCU       -    uuaa 

Annotation confidence High

Genome context

KB321076.1: 2051594-2051652 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-29a

Mature tch-miR-29a-5p

• Accession: MIMAT0059033
• Description: Tupaia chinensis tch-miR-29a-5p mature miRNA
• Sequence: 1 - ACUGAUUUCUUUUGGUGUUCAGA - 23
• Evidence: experimental ; Illumina [1]

Mature tch-miR-29a-3p

• Accession: MIMAT0036511
• Description: Tupaia chinensis tch-miR-29a-3p mature miRNA
• Sequence: 39 - UAGCACCAUCUGAAAUCGGUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254