Stem-loop tch-mir-9771f

Accession

MI0031198

Description

Tupaia chinensis tch-mir-9771f precursor miRNA

Sequence

8866 reads, 30.0 reads per million, 30 experiments

AUCGGGAAAGUCAUGACGCAUUugugcauagaaaaAUUUGCCCUGACUUUCCUGACG
.((((((((((((....(((..(............)..)))..))))))))))))..

Structure

-A            UGAC   UU gugca 
  UCGGGAAAGUCA    GCA  u     u
  ||||||||||||    |||  |      
  AGUCCUUUCAGU    CGU  A     a
GC            --CC   UU aaaag 

Annotation confidence Medium

Genome context

KB320604.1: 5398589-5398645 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-9771f

Mature tch-miR-9771f-5p

• Accession: MIMAT0059063
• Description: Tupaia chinensis tch-miR-9771f-5p mature miRNA
• Sequence: 1 - AUCGGGAAAGUCAUGACGCAUU - 22
• Evidence: experimental ; Illumina [1]

Mature tch-miR-9771f-3p

• Accession: MIMAT0036539
• Description: Tupaia chinensis tch-miR-9771f-3p mature miRNA
• Sequence: 36 - AUUUGCCCUGACUUUCCUGACG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254