Stem-loop tch-mir-29c

Accession

MI0031206

Description

Tupaia chinensis tch-mir-29c precursor miRNA

Literature search

1 open access papers mention tch-mir-29c
(1 sentences)

Sequence

2966454 reads, 12848.0 reads per million, 30 experiments

ACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUU
(((((((((...(((((((.(((...........))))))))))...))))))))).

Structure

-         UCC       C   gucu 
 ACCGAUUUC   UGGUGUU AGA    g
 |||||||||   ||||||| |||    u
 UGGCUAAAG   ACCACGA Ucu    u
U         UUU       -   guuu 

Annotation confidence High

Genome context

KB321094.1: 6017188-6017244 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-29c

Mature tch-miR-29c-5p

• Accession: MIMAT0059070
• Description: Tupaia chinensis tch-miR-29c-5p mature miRNA
• Sequence: 1 - ACCGAUUUCUCCUGGUGUUCAGA - 23
• Evidence: experimental ; Illumina [1]

Mature tch-miR-29c-3p

• Accession: MIMAT0036546
• Description: Tupaia chinensis tch-miR-29c-3p mature miRNA
• Sequence: 37 - UAGCACCAUUUGAAAUCGGUU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254