Stem-loop tch-mir-425

Accession

MI0031235

Description

Tupaia chinensis tch-mir-425 precursor miRNA

Sequence

108159 reads, 413.0 reads per million, 30 experiments

AAUGACACGAUCACUCCCGUUGAGUgggcacccaagaagcCAUCGGGAAUGUCGUGUCCGC
...(((((((.((.(((((....((((............))))))))).)))))))))...

Structure

AAU       U  C     UUGA    gcacc 
   GACACGA CA UCCCG    GUgg     c
   ||||||| || |||||    ||||      
   CUGUGCU GU AGGGC    UACc     a
CGC       -  A     ----    gaaga 

Annotation confidence Medium

Genome context

KB369979.1: 1119702-1119762 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-425

Mature tch-miR-425-5p

• Accession: MIMAT0036572
• Description: Tupaia chinensis tch-miR-425-5p mature miRNA
• Sequence: 1 - AAUGACACGAUCACUCCCGUUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature tch-miR-425-3p

• Accession: MIMAT0059094
• Description: Tupaia chinensis tch-miR-425-3p mature miRNA
• Sequence: 41 - CAUCGGGAAUGUCGUGUCCGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254