Stem-loop tch-mir-330

Accession

MI0031237

Description

Tupaia chinensis tch-mir-330 precursor miRNA

Sequence

176475 reads, 754.0 reads per million, 30 experiments

UCUCUGGGCCUGUGUCUUAGGcucugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGA
((((((((((((((.(((..((((.............)))).))))))).))))..))))))

Structure

      --    -    U   AG    ugcaa 
UCUCUG  GGCC UGUG CUU  Gcuc     g
||||||  |||| |||| |||  ||||     a
AGAGAC  CCGG ACAC GAA  CGag     u
      GU    C    -   -A    ccaac 

Annotation confidence Medium

Genome context

KB320473.1: 3525006-3525067 [-]

Mature tch-miR-330-5p

• Accession: MIMAT0059096
• Description: Tupaia chinensis tch-miR-330-5p mature miRNA
• Sequence: 1 - UCUCUGGGCCUGUGUCUUAGG - 21
• Evidence: experimental ; Illumina [1]

Mature tch-miR-330-3p

• Accession: MIMAT0036574
• Description: Tupaia chinensis tch-miR-330-3p mature miRNA
• Sequence: 40 - GCAAAGCACACGGCCUGCAGAGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254