miRBase entry: oha-mir-133a-1

Stem-loop oha-mir-133a-1

Accession

MI0031341

Description

Ophiophagus hannah oha-mir-133a-1 precursor miRNA

Sequence

cuuugcuuaAGCUGGUAAAAUGGAAUCAAAUcgcauguuuaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugu
....(((..(((((((..((.((.((((((((.(((.....))))))))))).)).))..)))))))..))).....

Structure

-cuuu   ua       AA  U  A        g   g 
     gcu  AGCUGGU  AA GG AUCAAAUc cau u
     |||  |||||||  || || |||||||| ||| u
     cga  UCGACCA  UU CC UGGUUUag gua u
uguau   uG       AC  C  C        -   a

Annotation confidence Not enough data

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Genome context

AZIM01001242.1: 200581-200657 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-mir-133a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-133a-1-5p

Accession	MIMAT0036698
Description	Ophiophagus hannah oha-miR-133a-1-5p mature miRNA
Sequence	10 - AGCUGGUAAAAUGGAAUCAAAU - 31
Evidence	not_experimental

Mature oha-miR-133a-3p

Accession	MIMAT0036699
Description	Ophiophagus hannah oha-miR-133a-3p mature miRNA
Sequence	47 - UUUGGUCCCCUUCAACCAGCUG - 68
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656