miRBase entry: oha-mir-27b

Stem-loop oha-mir-27b

Accession

MI0031438

Description

Ophiophagus hannah oha-mir-27b precursor miRNA

Sequence

agugaggugcAGAGCUUAGCUGAUUGGUGAACAGugauugauuuccucuuugUUCACAGUGGCUAAGUUCUGCAccugaaga
..(.(((((((((((((((((.((((.(((((((.((.........)).)))))))))))))))))))))))))))).)...

Structure

-ag g                 G    G       u  uug 
   u aggugcAGAGCUUAGCU AUUG UGAACAG ga   a
   | ||||||||||||||||| |||| ||||||| ||   u
   a uccACGUCUUGAAUCGG UGAC ACUUguu cu   u
aga g                 -    -       u  ccu

Annotation confidence Not enough data

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Genome context

AZIM01002605.1: 297162-297243 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oha-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oha-miR-27b-5p

Accession	MIMAT0036867
Description	Ophiophagus hannah oha-miR-27b-5p mature miRNA
Sequence	11 - AGAGCUUAGCUGAUUGGUGAACAG - 34
Evidence	not_experimental

Mature oha-miR-27b-3p

Accession	MIMAT0036868
Description	Ophiophagus hannah oha-miR-27b-3p mature miRNA
Sequence	53 - UUCACAGUGGCUAAGUUCUGCA - 74
Evidence	not_experimental

References

PubMed ID: 24297900
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
"Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wuster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pl"
"Proc Natl Acad Sci U S A (2013) 110:20651-20656