Stem-loop tae-MIR531

Accession

MI0031523

Description

Triticum aestivum tae-MIR531 precursor miRNA

Sequence

182244 reads, 8348.0 reads per million, 234 experiments

gguggcucCGCUCGCCGGAGCAGCGUGCAacggagggaUCCCGCGCGCUGCUCCGUCGAGCguggccacc
(((((((.((((((.(((((((((((((...(((....))).))))))))))))).)))))).)))))))

Structure

       c      C             Aac   g 
gguggcu CGCUCG CGGAGCAGCGUGC   gga g
||||||| |||||| |||||||||||||   |||  
ccaccgg gCGAGC GCCUCGUCGCGCG   CCU g
       u      U             --C   a 

Annotation confidence Low

Comments

This sequence was incorrectly named MIR2001 in [1].

Genome context

4B: 6658635-6658704 [-]

Mature tae-miR531-5p

• Accession: MIMAT0036981
• Description: Triticum aestivum tae-miR531-5p mature miRNA
• Sequence: 9 - CGCUCGCCGGAGCAGCGUGCA - 29
• Evidence: experimental ; Illumina [1]

Mature tae-miR531-3p

• Accession: MIMAT0056544
• Description: Triticum aestivum tae-miR531-3p mature miRNA
• Sequence: 39 - UCCCGCGCGCUGCUCCGUCGAGC - 61
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511