Stem-loop tae-MIR9772

Accession

MI0031524

Description

Triticum aestivum tae-MIR9772 precursor miRNA

Literature search

1 open access papers mention tae-MIR9772
(1 sentences)

Sequence

1642503 reads, 21304.0 reads per million, 235 experiments

agcggccguUGAGAUGAGAUUACCCCAUACcauauagcggcagcucgacuccgcacacgcguAGGGGGCAAUCUCACCUCAACagcuucu
((.(((.((((((.(((((((.((((.(((......((((.((.....))))))......))).)))).))))))).)))))).))).))

Structure

  c   c      A       A    A   cauaua    c  c 
ag ggc guUGAG UGAGAUU CCCC UAC      gcgg ag u
|| ||| |||||| ||||||| |||| |||      |||| || c
uc ucg CAACUC ACUCUAA GGGG Aug      cgcc uc g
  u   a      C       C    G   cgcaca    -  a 

Annotation confidence High

Comments

This sequence was incorrectly named MIR2002 in [1].

Genome context

5D: 148334018-148334107 [-]

Mature tae-miR9772-5p

• Accession: MIMAT0036982
• Description: Triticum aestivum tae-miR9772-5p mature miRNA
• Sequence: 10 - UGAGAUGAGAUUACCCCAUAC - 30
• Evidence: experimental ; Illumina [1]

Mature tae-miR9772-3p

• Accession: MIMAT0061494
• Description: Triticum aestivum tae-miR9772-3p mature miRNA
• Sequence: 63 - AGGGGGCAAUCUCACCUCAAC - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511