Stem-loop tae-MIR9672b

Accession

MI0031526

Description

Triticum aestivum tae-MIR9672b precursor miRNA

Literature search

3 open access papers mention tae-MIR9672b
(4 sentences)

Sequence

3652434 reads, 51590.0 reads per million, 235 experiments

gugaaggcgaUGCUUAAUGACAGUCGUGGUGuccuaggugaagacgaugcuuaauggccagcguagacagucgccuggcucuucuaggaUACCACGACUGUCAUUAAGCAucaucuucac
(((((((.((((((((((((((((((((((((((((((.((...............(((((((........)).))))))).)))))))))))))))))))))))))))))).)))))))

Structure

       c                              u  agacgaugcuuaaug     -  uag 
gugaagg gaUGCUUAAUGACAGUCGUGGUGuccuagg ga               gccag cg   a
||||||| |||||||||||||||||||||||||||||| ||               ||||| ||    
cacuucu cuACGAAUUACUGUCAGCACCAUaggaucu cu               cgguc gc   c
       a                              u  ---------------     c  uga 

Annotation confidence High

Comments

This sequence was incorrectly named MIR2006 in [1].

Genome context

5D: 101564640-101564759 [-]

Mature tae-miR9672b-5p

• Accession: MIMAT0056546
• Description: Triticum aestivum tae-miR9672b-5p mature miRNA
• Sequence: 11 - UGCUUAAUGACAGUCGUGGUG - 31
• Evidence: experimental ; unknown

Mature tae-miR9672b-3p

• Accession: MIMAT0036984
• Description: Triticum aestivum tae-miR9672b-3p mature miRNA
• Sequence: 90 - UACCACGACUGUCAUUAAGCA - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511