Stem-loop tae-MIR530

Accession

MI0031529

Description

Triticum aestivum tae-MIR530 precursor miRNA

Literature search

2 open access papers mention tae-MIR530
(4 sentences)

Sequence

70528 reads, 444.0 reads per million, 192 experiments

guuaugggauagagCUGCAUUUGCACCUGCACCUAgagaggaagaaaggucgagggcuuggaacuuggccaugcaugcgauugcgaugcaugcaacguucuccuugacccucucgcucuuccuguaggUGCAGUGGCAUAUGCAACUCUaucacaggca
((..((.(((((((.(((((.(((..((((((((((((((..(((..((((((((....((((((((..(((((((((....)).)))))))))).))))))))))))).)))..)))))....)))))))))..))).))))).))))))).)).)).

Structure

-  ua  g       C     U   AC         ----     ga   aa        gcuu     -   gc       -  g 
 gu  ug gauagag UGCAU UGC  CUGCACCUA    gagag  aga  ggucgagg    ggaac uug  caugcau gc a
 ||  || ||||||| ||||| |||  |||||||||    |||||  |||  ||||||||    ||||| |||  ||||||| ||  
 cg  ac cuaUCUC ACGUA ACG  GACGUggau    uucuc  ucu  ccaguucc    ucuug aac  guacgua cg u
a  -g  a       A     U   GU         gucc     gc   -c        ----     c   --       g  u 

Annotation confidence High

Comments

This sequence was incorrectly named MIR2011 in [1].

Genome context

2A: 45376849-45377007 [+]

Mature tae-miR530-5p

• Accession: MIMAT0056549
• Description: Triticum aestivum tae-miR530-5p mature miRNA
• Sequence: 15 - CUGCAUUUGCACCUGCACCUA - 35
• Evidence: experimental ; unknown

Mature tae-miR530-3p

• Accession: MIMAT0036987
• Description: Triticum aestivum tae-miR530-3p mature miRNA
• Sequence: 129 - UGCAGUGGCAUAUGCAACUCU - 149
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511