Stem-loop tae-MIR5050

Accession

MI0031531

Description

Triticum aestivum tae-MIR5050 precursor miRNA

Literature search

1 open access papers mention tae-MIR5050
(6 sentences)

Sequence

324805 reads, 1465.0 reads per million, 228 experiments

gccggUUGAACGACCUCACCAUGUCGaccgccucuccucaagaagugccagggagaucugcucgugCCAUGAUGAGGUCGUUCAACCagc
((.(((((((((((((((.((((.(((.((..((((((............))))))..)).)))...)))).))))))))))))))).))

Structure

  c               C    --U   c  cc      caaga 
gc ggUUGAACGACCUCA CAUG   CGa cg  ucuccu     a
|| ||||||||||||||| ||||   ||| ||  ||||||      
cg CCAACUUGCUGGAGU GUAC   gcu gu  agaggg     g
  a               A    Cgu   c  cu      accgu 

Annotation confidence High

Comments

This sequence was incorrectly named MIR2013 in [1].

Genome context

Unknown

Mature tae-miR5050-5p

• Accession: MIMAT0036989
• Description: Triticum aestivum tae-miR5050-5p mature miRNA
• Sequence: 6 - UUGAACGACCUCACCAUGUCG - 26
• Evidence: experimental ; Illumina [1]

Mature tae-miR5050-3p

• Accession: MIMAT0061495
• Description: Triticum aestivum tae-miR5050-3p mature miRNA
• Sequence: 67 - CCAUGAUGAGGUCGUUCAACC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511