Stem-loop tae-MIR9778

Accession

MI0031533

Description

Triticum aestivum tae-MIR9778 precursor miRNA

Literature search

2 open access papers mention tae-MIR9778
(2 sentences)

Sequence

159380 reads, 1300.0 reads per million, 150 experiments

gaagcccUGCAUCAUCUCGAACUCGUCGgugcgauagcgugcagcgugacaugcuguucaucaccaACGAGUUCCAGACGAUGCAGGccuuc
((((.((((((((.(((.((((((((.((((.(((((((((((...)).)))))))))...)))).)))))))).))).)))))))).))))

Structure

    c        A   C        C    --c         -  g 
gaag ccUGCAUC UCU GAACUCGU Ggug   gauagcgug ca  
|||| |||||||| ||| |||||||| ||||   ||||||||| || c
cuuc GGACGUAG AGA CUUGAGCA ccac   uugucguac gu  
    c        C   C        a    uac         a  g 

Annotation confidence Medium

Comments

This sequence was incorrectly named MIR2015 in [1].

Genome context

Unknown

Mature tae-miR9778-5p

• Accession: MIMAT0036991
• Description: Triticum aestivum tae-miR9778-5p mature miRNA
• Sequence: 8 - UGCAUCAUCUCGAACUCGUCG - 28
• Evidence: experimental ; Illumina [1]

Mature tae-miR9778-3p

• Accession: MIMAT0056552
• Description: Triticum aestivum tae-miR9778-3p mature miRNA
• Sequence: 67 - ACGAGUUCCAGACGAUGCAGG - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511