Stem-loop tae-MIR6201

Accession

MI0031534

Description

Triticum aestivum tae-MIR6201 precursor miRNA

Literature search

1 open access papers mention tae-MIR6201
(2 sentences)

Sequence

18945 reads, 1958.0 reads per million, 196 experiments

accugaguuUGACCCUGAGGCACUCAUACCGccagcuuguuuagaaugcuagccgcaugagugccucaugcagcgguaucgccggUAUGAGUGUUUCAGGGUCAAGcuucggu
(((.(((((((((((((((((((((((((((...(((.((.......)).))).(((((((...))))))).(((....)))))))))))))))))))))))))))))).)))

Structure

   u                           ccagcuuguuuagaaugcuagcc       u 
acc gaguuUGACCCUGAGGCACUCAUACCG                       gcaugag  
||| |||||||||||||||||||||||||||                       ||||||| g
ugg uucGAACUGGGACUUUGUGAGUAUggc                       cguacuc  
   c                           ------------cgcuauggcga       c 

Annotation confidence High

Comments

This sequence was incorrectly named MIR2016 in [1].

Genome context

6A: 206659204-206659316 [-]

Mature tae-miR6201-5p

• Accession: MIMAT0036992
• Description: Triticum aestivum tae-miR6201-5p mature miRNA
• Sequence: 10 - UGACCCUGAGGCACUCAUACCG - 31
• Evidence: experimental ; Illumina [1]

Mature tae-miR6201-3p

• Accession: MIMAT0056553
• Description: Triticum aestivum tae-miR6201-3p mature miRNA
• Sequence: 86 - UAUGAGUGUUUCAGGGUCAAG - 106
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511