Stem-loop tae-MIR9653b

Accession

MI0031538

Description

Triticum aestivum tae-MIR9653b precursor miRNA

Literature search

2 open access papers mention tae-MIR9653b
(3 sentences)

Sequence

348157 reads, 11337.0 reads per million, 234 experiments

ccacggccaUGGCCAAGGUCUCUUGAGGCUugGCCUUGAAGACUUUGGCCAuguccaugg
(((.((.((((((((((((((.(((((((...))))))))))))))))))))).)).)))

Structure

   c  c              C       U 
cca gg caUGGCCAAGGUCU UUGAGGC  
||| || |||||||||||||| ||||||| u
ggu cc guACCGGUUUCAGA AGUUCCG  
   a  u              -       g 

Annotation confidence High

Comments

This sequence was incorrectly named MIR2022 in [1].

Genome context

1D: 134547683-134547742 [+]

Mature tae-miR9653b-5p

• Accession: MIMAT0036996
• Description: Triticum aestivum tae-miR9653b-5p mature miRNA
• Sequence: 10 - UGGCCAAGGUCUCUUGAGGCU - 30
• Evidence: experimental ; Illumina [1]

Mature tae-miR9653b-3p

• Accession: MIMAT0056556
• Description: Triticum aestivum tae-miR9653b-3p mature miRNA
• Sequence: 33 - GCCUUGAAGACUUUGGCCA - 51
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511