Stem-loop tae-MIR9782

Accession

MI0031539

Description

Triticum aestivum tae-MIR9782 precursor miRNA

Sequence

16407 reads, 170.0 reads per million, 212 experiments

agguugucaauuuuaucacccuaauauaaacuauauagcacaaaaauuAUACCGUUUGAAAAUAGAACAUAUgaaguuuauauugguauauuuuuuguaauauuugacuuGUAUUAGGUUGGUCAAAUUGACGAccu
(((((((((((((.((((.((((((((((.....(((..(((((((.((((((((((.......))))((((((...)))))).)))))).)))))))..))).....)))))))))).)))).)))))))))))))

Structure

             u    c          acuau   gc       u      ----------------    GA 
agguugucaauuu auca ccuaauauaa     aua  acaaaaa uAUACC                GUUU  A
||||||||||||| |||| ||||||||||     |||  ||||||| ||||||                ||||  A
uccAGCAGUUAAA UGGU GGAUUAUGuu     uau  uguuuuu auaugg                CAAG  A
             C    U          caguu   aa       u      uuauauuugaagUAUA    AU 

Annotation confidence Low

Comments

This sequence was incorrectly named MIR2027 in [1].

Genome context

5D: 24902966-24903102 [-]

Mature tae-miR9782-5p

• Accession: MIMAT0056557
• Description: Triticum aestivum tae-miR9782-5p mature miRNA
• Sequence: 49 - AUACCGUUUGAAAAUAGAACAUAU - 72
• Evidence: experimental ; unknown

Mature tae-miR9782-3p

• Accession: MIMAT0036997
• Description: Triticum aestivum tae-miR9782-3p mature miRNA
• Sequence: 111 - GUAUUAGGUUGGUCAAAUUGACGA - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511