Stem-loop tae-MIR9677b

Accession

MI0031540

Description

Triticum aestivum tae-MIR9677b precursor miRNA

Sequence

13873 reads, 3558.0 reads per million, 132 experiments

ugcugggcauCAGGGCGGGGAACAGGUGGCCaugcucgucuccuacucuaccaacggccacgccauggucgcgGGGGAGACGUGGCUGUUGGuagaguggaagagaagcgaggccgccuuugauggugagcaccgcgca
((((.(.((((((..........((((((((.((((..(((.((((((((((((((((((((((.((....)).))....)))))))))))))))))))).)))..)))).)))))))))))))).).)))).......

Structure

-------    g g      GGCGGGGAAC        a    cg   c                    ----  a  g 
       ugcu g cauCAG          AGGUGGCC ugcu  ucu cuacucuaccaacggccacg    cc ug u
       |||| | ||||||          |||||||| ||||  ||| ||||||||||||||||||||    || ||  
       acga u guaguu          uccgccgg gcga  aga ggugagauGGUUGUCGGUGC    GG gc c
acgcgcc    g g      ----------        a    ag   a                    AGAG  G  g 

Annotation confidence Medium

Comments

This sequence was incorrectly named MIR2030 in [1].

Genome context

Unknown

Mature tae-miR9677b-5p

• Accession: MIMAT0036998
• Description: Triticum aestivum tae-miR9677b-5p mature miRNA
• Sequence: 11 - CAGGGCGGGGAACAGGUGGCC - 31
• Evidence: experimental ; Illumina [1]

Mature tae-miR9677b-3p

• Accession: MIMAT0056558
• Description: Triticum aestivum tae-miR9677b-3p mature miRNA
• Sequence: 74 - GGGGAGACGUGGCUGUUGG - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511