Stem-loop tae-MIR5200

Accession

MI0031542

Description

Triticum aestivum tae-MIR5200 precursor miRNA

Literature search

7 open access papers mention tae-MIR5200
(30 sentences)

Sequence

990193 reads, 5761.0 reads per million, 200 experiments

acuaauUAAGCCUUAGUGAAUAUCUACacuaguaaguuuuucuucauguuugaaaugcuuagcauUGUAGAUACUCCCUAAGGCUUggguggu
((((.(((((((((((.((.((((((((....(((((.((((.........)))).)))))....)))))))).)).))))))))))).))))

Structure

    a           U  A        cuag     u    uuc 
acua uUAAGCCUUAG GA UAUCUACa    uaagu uuuc   a
|||| ||||||||||| || ||||||||    ||||| ||||   u
uggu ggUUCGGAAUC CU AUAGAUGU    auucg aaag   g
    g           C  C        uacg     u    uuu 

Annotation confidence Medium

Comments

This sequence was incorrectly named MIR2032 in [1].

Genome context

7B: 3426801-3426893 [+]

Mature tae-miR5200-5p

• Accession: MIMAT0061496
• Description: Triticum aestivum tae-miR5200-5p mature miRNA
• Sequence: 7 - UAAGCCUUAGUGAAUAUCUAC - 27
• Evidence: experimental ; unknown

Mature tae-miR5200-3p

• Accession: MIMAT0037000
• Description: Triticum aestivum tae-miR5200-3p mature miRNA
• Sequence: 66 - UGUAGAUACUCCCUAAGGCUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19499258
   Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv
   "Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L"
   "Funct Integr Genomics (2009) 9:499-511