Stem-loop ssc-mir-9788-2

Accession

MI0031550

Description

Sus scrofa ssc-mir-9788-2 precursor miRNA

Sequence

28660 reads, 13.0 reads per million, 160 experiments

agggggagguggaccccacccagguaggUGCGGCCCCUUCGUUCUACCCCcggagcccacaggggUAGAGGAGAGGCUACCACCaccacgccugugcc
(((.(..(((((...)))))..(((.((((.((((.((((..((((((((.(.......).)))))))))))).))))..))))))).).))).....

Structure

-----   g gagguggaccccaccca   a    -C    C    GU        c ga 
     agg g                 ggu ggUG  GGCC CUUC  UCUACCCC g  g
     ||| |                 ||| ||||  |||| ||||  |||||||| |  c
     ucc c                 cca CCAC  UCGG GAGG  AGAUgggg c  c
ccgug   g ----------------a   -    CA    A    --        a ac 

Annotation confidence Medium

Genome context

chr12: 20428414-20428511 [-]

Mature ssc-miR-9788-5p

• Accession: MIMAT0052699
• Description: Sus scrofa ssc-miR-9788-5p mature miRNA
• Sequence: 29 - UGCGGCCCCUUCGUUCUACCCC - 50
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-9788-3p

• Accession: MIMAT0037005
• Description: Sus scrofa ssc-miR-9788-3p mature miRNA
• Sequence: 66 - UAGAGGAGAGGCUACCACC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100