Stem-loop ssc-mir-7857

Accession

MI0031552

Description

Sus scrofa ssc-mir-7857 precursor miRNA

Literature search

1 open access papers mention ssc-mir-7857
(1 sentences)

Sequence

61884 reads, 53.0 reads per million, 173 experiments

cuauugaagcAUAGCCAGUUUGGGAAGAAUGCuguuacccucaaggaagaaacuggAUUGUUCUCCAACCUGGCUCUUuaguuaccag
..(((((((...((((((.(((((((.(((.(.(((..((....))....))).).))).))).)))).)))))))))))))......

Structure

----cu       cAU      U    -   G   G u   --ac  u 
      auugaag   AGCCAG UUGG GAA AAU C guu    cc c
      |||||||   |||||| |||| ||| ||| | |||    ||  
      ugauUUC   UCGGUC AACC CUU UUA g caa    gg a
gaccau       ---      C    U   G   g u   agaa  a 

Annotation confidence High

Genome context

chr7: 22962941-22963028 [+]

Mature ssc-miR-7857-5p

• Accession: MIMAT0052700
• Description: Sus scrofa ssc-miR-7857-5p mature miRNA
• Sequence: 11 - AUAGCCAGUUUGGGAAGAAUGC - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-7857-3p

• Accession: MIMAT0037007
• Description: Sus scrofa ssc-miR-7857-3p mature miRNA
• Sequence: 57 - AUUGUUCUCCAACCUGGCUCUU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100