Stem-loop ssc-mir-9810

Accession

MI0031577

Description

Sus scrofa ssc-mir-9810 precursor miRNA

Sequence

6505 reads, 6.0 reads per million, 172 experiments

gaggagggcgagaggcguugaggcagGGGAGAGUGACGAGGUGCCCUUcauugucagccagggaCGAGCACGCGGCCACUCUCCCCUcacuccga
....((.((.....)).))(((..(((((((((((.((..((((......(((((.......))))))))).))..)))))))))))..)))...

Structure

gaggagggcgagaggcguu   gc           -A  AG    CCUUca     ag 
                   gag  agGGGAGAGUG  CG  GUGC      uuguc  c
                   |||  |||||||||||  ||  ||||      |||||  c
                   cuc  UCCCCUCUCAC  GC  CACG      AGCag  a
----------------agc   ac           CG  -G    ------     gg 

Annotation confidence Medium

Genome context

chr4: 90746011-90746105 [+]

Mature ssc-miR-9810-5p

• Accession: MIMAT0052702
• Description: Sus scrofa ssc-miR-9810-5p mature miRNA
• Sequence: 27 - GGGAGAGUGACGAGGUGCCCUU - 48
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-9810-3p

• Accession: MIMAT0037028
• Description: Sus scrofa ssc-miR-9810-3p mature miRNA
• Sequence: 65 - CGAGCACGCGGCCACUCUCCCCU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100