Stem-loop ssc-mir-9820

Accession

MI0031587

Description

Sus scrofa ssc-mir-9820 precursor miRNA

Sequence

4227 reads, 5.0 reads per million, 125 experiments

acccugcaguGAGGAGGAGGGAAGAAAGGCUGcugcuguucuucucgcAGUCUUCCAGCCCUCCCCCUGcagcag
...((((((...((.((((((..(.((((((((.............)))))))).)..))))))))))))))...

Structure

acc      uGA  A      AA A        ugcug 
   cugcag   GG GGAGGG  G AAGGCUGc     u
   ||||||   || ||||||  | ||||||||     u
   gacGUC   CC CCUCCC  C UUCUGAcg     c
gac      ---  -      GA C        cucuu 

Annotation confidence High

Genome context

chr2: 146762443-146762517 [-]

Mature ssc-miR-9820-5p

• Accession: MIMAT0037038
• Description: Sus scrofa ssc-miR-9820-5p mature miRNA
• Sequence: 11 - GAGGAGGAGGGAAGAAAGGCUG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-9820-3p

• Accession: MIMAT0052703
• Description: Sus scrofa ssc-miR-9820-3p mature miRNA
• Sequence: 49 - AGUCUUCCAGCCCUCCCCCUG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100