miRBase entry: ssc-mir-9828-2

Stem-loop ssc-mir-9828-2

Accession

MI0031596

Description

Sus scrofa ssc-mir-9828-2 precursor miRNA

Sequence

augugggagccgcccggcuucccgagagacaccugguaugaaugccugaucgaaagagaggucgaguGGUUUCAGGCCGGUCGCUCGAuagaaagaaa
....(((((((....)))))))((((.(((...((((.((((.(((...((((........))))..))))))).))))))).))))...........

Structure

augugggagccgcccggcuucc    a   acc    a    u   uga    aag 
                      cgag gac   uggu ugaa gcc   ucga   a
                      |||| |||   |||| |||| |||   ||||    
                      GCUC CUG   GCCG ACUU UGG   agcu   g
-----------aaagaaagauA    G   ---    G    -   -ug    gga

Annotation confidence Not enough data

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Genome context

chr12: 61821304-61821401 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-9828-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ssc-miR-9828-3p

Accession	MIMAT0037046
Description	Sus scrofa ssc-miR-9828-3p mature miRNA
Sequence	68 - GGUUUCAGGCCGGUCGCUCGA - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 24499489
Exploration of microRNAs in porcine milk exosomes
Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
BMC Genomics (2014) 15:100