Stem-loop ssc-mir-9843

Accession

MI0031612

Description

Sus scrofa ssc-mir-9843 precursor miRNA

Literature search

2 open access papers mention ssc-mir-9843
(3 sentences)

Sequence

102112 reads, 62.0 reads per million, 201 experiments

uacacagcuuucCAGAGGUUUCCAGCUUAUAGGAuauucauaugguaguUCUGUGAACUAGAAACCUCUGGAaaguggugu
.((((.((((((((((((((((.((.(((((((((..((....))..))))))))).)).)))))))))))))))).))))

Structure

u    a                C  C         au  a 
 acac gcuuucCAGAGGUUUC AG UUAUAGGAu  uc u
 |||| |||||||||||||||| || |||||||||  ||  
 ugug ugaaAGGUCUCCAAAG UC AGUGUCUug  gg a
-    g                A  A         au  u 

Annotation confidence High

Genome context

chr8: 122371904-122371984 [-]

Mature ssc-miR-9843-5p

• Accession: MIMAT0052705
• Description: Sus scrofa ssc-miR-9843-5p mature miRNA
• Sequence: 13 - CAGAGGUUUCCAGCUUAUAGGA - 34
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-9843-3p

• Accession: MIMAT0037061
• Description: Sus scrofa ssc-miR-9843-3p mature miRNA
• Sequence: 50 - UCUGUGAACUAGAAACCUCUGGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100