Stem-loop ssc-mir-96

Accession

MI0031644

Description

Sus scrofa ssc-mir-96 precursor miRNA

Literature search

12 open access papers mention ssc-mir-96
(16 sentences)

Sequence

259044 reads, 312.0 reads per million, 193 experiments

cugggccgauUUUGGCACUAGCACAUUUUUGcuugugucucuccgcucugagCAAUUAUGUGCAGUGCCAAUAugggaaagcagg
(((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))....))).

Structure

-   --gg  g  U        A      UU      ---   uc 
 cug    cc au UUGGCACU GCACAU  UUGcuu   gug  u
 |||    || || |||||||| ||||||  ||||||   |||   
 gac    gg uA AACCGUGA CGUGUA  AACgag   cgc  c
g   gaaa  g  U        -      UU      ucu   cu 

Annotation confidence High

Genome context

chr18: 20030888-20030972 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-96

Mature ssc-miR-96-5p

• Accession: MIMAT0037085
• Description: Sus scrofa ssc-miR-96-5p mature miRNA
• Sequence: 11 - UUUGGCACUAGCACAUUUUUG - 31
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-96-3p

• Accession: MIMAT0052711
• Description: Sus scrofa ssc-miR-96-3p mature miRNA
• Sequence: 53 - CAAUUAUGUGCAGUGCCAAUA - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100