Stem-loop ata-MIR2118c

Accession

MI0031659

Description

Aegilops tauschii ata-MIR2118c precursor miRNA

Literature search

1 open access papers mention ata-MIR2118c
(1 sentences)

Sequence

ucuuagagcggugggcaugggaacauagaggaaagccuagauuucuuggccucuuaauuuaggggcaaagauuguuuuguguuUUCCUGAUGCCUCCCAUGCCUAuaguucuuag
.((.(((((.((((((((((((.(((..(((((((((.((((.((((.((((((......)))))).))))..)))).).)))))))).)))..)))))))))))).))))).))

Structure

u  u     g            -a   ag        - u    -u    g      ua 
 cu agagc gugggcauggga  cau  aggaaagc c agau  ucuu gccucu  a
 || ||||| ||||||||||||  |||  |||||||| | ||||  |||| ||||||   
 ga ucuug uAUCCGUACCCU  GUA  UCCUUuug g uuug  agaa cgggga  u
-  u     a            CC   -G        u u    uu    a      uu 

Annotation confidence Not enough data

Genome context

chr5: 22042641-22042755 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR2118c

Mature ata-miR2118c-3p

• Accession: MIMAT0037114
• Description: Aegilops tauschii ata-miR2118c-3p mature miRNA
• Sequence: 84 - UUCCUGAUGCCUCCCAUGCCUA - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95