Stem-loop ata-MIR169e

Accession

MI0031660

Description

Aegilops tauschii ata-MIR169e precursor miRNA

Literature search

1 open access papers mention ata-MIR169e
(1 sentences)

Sequence

gaguggaaugCAGCCAAGGAUGACUUGCCGAcagcacacaacaaggugguaguaaucuugccggcaaguccguccuuggcuacaccuugcucu
((((((..((.(((((((((((((((((((.((((.(((......)))))........)).)))))))).))))))))))).))..)))))).

Structure

-      aa  C           -        A  --------  a   aa 
 gagugg  ug AGCCAAGGAUG ACUUGCCG ca        gc cac  c
 ||||||  || ||||||||||| |||||||| ||        || |||   
 cucguu  ac ucgguuccugc ugaacggc gu        ug gug  a
u      cc  a           c        c  ucuaauga  -   ga 

Annotation confidence Not enough data

Genome context

chr2: 452091058-452091150 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR169e

Mature ata-miR169e-5p

• Accession: MIMAT0037115
• Description: Aegilops tauschii ata-miR169e-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95