Stem-loop ata-MIR172a

Accession

MI0031670

Description

Aegilops tauschii ata-MIR172a precursor miRNA

Literature search

1 open access papers mention ata-MIR172a
(2 sentences)

Sequence

guuugcgggcGCGGCACCAUCAAGAUUCACAuccaucccauccaggcauccuucgguucguuuccaaaacgaaacgaucgacaacgcguuggauacaauauagaugugcaugAGAAUCUUGAUGAUGCUGCGUccgcacacaa
((.(((((((((((((.(((((((((((.((((((((..((((((((.....(((((.((((((......)))))))))))....)).))))))........)))).).))).))))))))))).))))))))))))).))..

Structure

--  u             C           A   - -    ------cc      -  auccu     u      ca 
  gu ugcgggcGCGGCA CAUCAAGAUUC CAu c cauc        auccag gc     ucggu cguuuc  a
  || ||||||||||||| ||||||||||| ||| | ||||        |||||| ||     ||||| ||||||   
  ca acgccUGCGUCGU GUAGUUCUAAG gua g guag        uagguu cg     agcua gcaaag  a
aa  c             A           A   c u    auauaaca      g  -caac     -      ca 

Annotation confidence Not enough data

Genome context

chr7: 7396218-7396360 [+]

Mature ata-miR172a-5p

• Accession: MIMAT0037134
• Description: Aegilops tauschii ata-miR172a-5p mature miRNA
• Sequence: 11 - GCGGCACCAUCAAGAUUCACA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR172a-3p

• Accession: MIMAT0037135
• Description: Aegilops tauschii ata-miR172a-3p mature miRNA
• Sequence: 113 - AGAAUCUUGAUGAUGCUGCGU - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95