Stem-loop ata-MIR5200

Accession

MI0031672

Description

Aegilops tauschii ata-MIR5200 precursor miRNA

Sequence

uuaagcacuaAAGCCUUAGUGAAUAUCUACAcuaguaaguuuuucuucaugcuggaaaugcuuagcauUGUAGAUACUCCCUAAGGCUUgggugguauu
...(.((((.(((((((((.((.((((((((....(((((.(((((.......))))).)))))....)))))))).)).))))))))).)))).)...

Structure

uua g    a         U  A        cuag     u     uc 
   a cacu AAGCCUUAG GA UAUCUACA    uaagu uuucu  a
   | |||| ||||||||| || ||||||||    ||||| |||||  u
   u gugg UUCGGAAUC CU AUAGAUGU    auucg aaagg  g
uua g    g         C  C        uacg     u     uc 

Annotation confidence Not enough data

Genome context

chr7: 61059186-61059284 [+]

Mature ata-miR5200-5p

• Accession: MIMAT0037138
• Description: Aegilops tauschii ata-miR5200-5p mature miRNA
• Sequence: 11 - AAGCCUUAGUGAAUAUCUACA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR5200-3p

• Accession: MIMAT0037139
• Description: Aegilops tauschii ata-miR5200-3p mature miRNA
• Sequence: 69 - UGUAGAUACUCCCUAAGGCUU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95