miRBase entry: ata-MIR395b

Stem-loop ata-MIR395b

Accession

MI0031678

Description

Aegilops tauschii ata-MIR395b precursor miRNA

Sequence

cuuacugcggGUUCCCUGCAAACACUUCACGaagcauuauuucaaacgccauugcgaaguguuuggaggaacucuuggugaagucaagcuccaagaacuaagaaggugaucaauacgaagcauguuuggucuuaccguggguucccuacgagcacuccacgaggcauuauuccaaauaccacugugAAGUGUUUGGGGGAACUCuuggugaugc
.((((((.(((((((((.((((((((((((((((.....))))...(((....)))..((((((((((.....(((.(((.(((...((((...(((((.....(((((((((.((.......))))))))..)))...))))).....))))))).))).))).....))))))))))....))))))))))))))))))))).))))))...

Structure

--c      c         G            --------------------------------------------------------------------------------------------------------------------------------------------    c 
   uuacug ggGUUCCCU CAAACACUUCAC                                                                                                                                            Gaag a
   |||||| ||||||||| ||||||||||||                                                                                                                                            |||| u
   aguggu CUCAAGGGG GUUUGUGAAgug                                                                                                                                            cuuu u
cgu      u         -            ucaccauaaaccuuauuacggagcaccucacgagcaucccuugggugccauucugguuuguacgaagcauaacuaguggaagaaucaagaaccucgaacugaagugguucucaaggagguuugugaagcguuaccgcaaa    a

Annotation confidence Not enough data

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Genome context

chr2: 522773862-522774075 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR395b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ata-miR395b-5p

Accession	MIMAT0037150
Description	Aegilops tauschii ata-miR395b-5p mature miRNA
Sequence	11 - GUUCCCUGCAAACACUUCACG - 31
Evidence	experimental Illumina [1]

Mature ata-miR395b-3p

Accession	MIMAT0037151
Description	Aegilops tauschii ata-miR395b-3p mature miRNA
Sequence	187 - AAGUGUUUGGGGGAACUC - 204
Evidence	experimental Illumina [1]

References

PubMed ID: 23535592
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
"Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
"Nature (2013) 496:91-95