Stem-loop ata-MIR5062a

Accession

MI0031696

Description

Aegilops tauschii ata-MIR5062a precursor miRNA

Sequence

cguagcuucuUGAACCUUAGGGAAAAGCCGCAUaacaccauuaacuugaaaaccacuuaucuuaucccagaacugcuccuaccacaauauaagggguaaaaaaugguuuuuaguuugugaggucauGUGGAUUUUUCACCAAGAUUCAAGugguuauc
.((((((.((((((.(((.((((((((((((((.((..(((.((((.((((((((.((...(((((((........................))))))).)).)))))))))))).)))..)).)))))).)))))).))))).)))))).)))))).

Structure

c      u      C   A  -      -      a  ac   u    u        c  auc       agaacugcucc 
 guagcu cuUGAA CUU GG GAAAAG CCGCAU ac  cau aacu gaaaacca uu   uuauccc           u
 |||||| |||||| ||| || |||||| |||||| ||  ||| |||| |||||||| ||   |||||||            
 uauugg GAACUU GAA CC CUUUUU GGUGua ug  gug uuga uuuuuggu aa   aaugggg           a
c      u      A   -  A      A      c  ga   u    -        a  --a       aauauaacacc 

Annotation confidence Not enough data

Genome context

chr5: 421456466-421456623 [+]

Mature ata-miR5062a-5p

• Accession: MIMAT0037186
• Description: Aegilops tauschii ata-miR5062a-5p mature miRNA
• Sequence: 11 - UGAACCUUAGGGAAAAGCCGCAU - 33
• Evidence: experimental ; Illumina [1]

Mature ata-miR5062a-3p

• Accession: MIMAT0037187
• Description: Aegilops tauschii ata-miR5062a-3p mature miRNA
• Sequence: 127 - GUGGAUUUUUCACCAAGAUUCAAG - 150
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95