Stem-loop ata-MIR399b

Accession

MI0031702

Description

Aegilops tauschii ata-MIR399b precursor miRNA

Sequence

gugugaauccCAGGGCGCUUCUCCUUUGGCAcggaggcauacuuguacugaugguaggaguuggccaggugaggaagcuccaggccgaucagugugugcagcuagccagccgcgucgcgcgUGCCAAAGGAGAAUUGCCCUGcgauucaccu
..(((((((.(((((((.((((((((((((((...(((..((((.((((...)))).))))..))).(((..(((...)))..))).....((((((((.(((....))).))).))))))))))))))))))).))))))).)))))))..

Structure

gu       c       C              ---------------------------------------------------gga   au    g    g 
  gugaauc CAGGGCG UUCUCCUUUGGCAc                                                      ggc  acuu uacu  
  ||||||| ||||||| ||||||||||||||                                                      |||  |||| |||| a
  cacuuag GUCCCGU AAGAGGAAACCGUg                                                      ccg  ugag augg  
uc       c       U              cgcgcugcgccgaccgaucgacgugugugacuagccggaccucgaaggagugga   gu    g    u 

Annotation confidence Not enough data

Genome context

chr4: 296544441-296544592 [+]

Mature ata-miR399b-5p

• Accession: MIMAT0037198
• Description: Aegilops tauschii ata-miR399b-5p mature miRNA
• Sequence: 11 - CAGGGCGCUUCUCCUUUGGCA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR399b-3p

• Accession: MIMAT0037199
• Description: Aegilops tauschii ata-miR399b-3p mature miRNA
• Sequence: 122 - UGCCAAAGGAGAAUUGCCCUG - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95