Stem-loop ata-MIR5062b

Accession

MI0031704

Description

Aegilops tauschii ata-MIR5062b precursor miRNA

Sequence

gugaggucauGCGGAUUUUUCACCAAGAUUCAAGugguuaucuggaucuuuugacuuaagugcuccuaccacaauguaccuagcguuuuauuacccauguuuuuuuauuaucauauuguaccugggugcaauuaugugcaaguuauauguggucacuggauugcauguaacaaguaagguucacguagcuucuUGAACCUUAGGGAAAAGCCGCAUaacaccauua
(((..((.((((((.((((((.(((((.((((((.((((((.((((((((...((((............((((.(((((((((.((.................................)))))))))))....))))...(((((((((((((....))))))))))))))))))))))))).)))))).)))))).))).)))))))))))))).))..)))..

Structure

--   ag  c      A      A  -   A      u      c        uug    ---------------------aagugcuccuac    ---a         c  uuuauuacccauguu 
  gug  gu auGCGG UUUUUC CC AAG UUCAAG gguuau uggaucuu   acuu                                 caca    uguaccuag gu               u
  |||  || |||||| |||||| || ||| |||||| |||||| ||||||||   ||||                                 ||||    ||||||||| ||               u
  uac  ca UACGCC GAAAAG GG UUC AAGUuc ucgaug acuuggaa   ugaa                                 gugu    acguggguc ca               u
au   ca  a      -      -  A   C      u      c        ---    caauguacguuaggucacugguguauauugaac    auua         -  uguuauacuauuauu 

Annotation confidence Low

Genome context

Unknown

Mature ata-miR5062b-5p

• Accession: MIMAT0037202
• Description: Aegilops tauschii ata-miR5062b-5p mature miRNA
• Sequence: 11 - GCGGAUUUUUCACCAAGAUUCAAG - 34
• Evidence: experimental ; Illumina [1]

Mature ata-miR5062b-3p

• Accession: MIMAT0037203
• Description: Aegilops tauschii ata-miR5062b-3p mature miRNA
• Sequence: 194 - UGAACCUUAGGGAAAAGCCGCAU - 216
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95