Stem-loop ata-MIR169d

Accession

MI0031706

Description

Aegilops tauschii ata-MIR169d precursor miRNA

Literature search

1 open access papers mention ata-MIR169d
(1 sentences)

Sequence

gaacgggaugCAGCCAAGGAUGACUUGCCGGcuccugguguugggaguucacugagcuuuagaguuagccGGCAAGUUGUCCUUGGCUACAccuaguucuc
(((((((.((.(((((((((((((((((((((((((((.(((.((......)).))).)))).)..)))))))))))))))))))))).))))).))))..

Structure

--    -   a  C                      -- -    u   g  ag 
  gaac ggg ug AGCCAAGGAUGACUUGCCGGcu  c cugg guu gg  u
  |||| ||| || ||||||||||||||||||||||  | |||| ||| ||   
  cuug ucc AC UCGGUUCCUGUUGAACGGccga  g gauu cga uc  u
cu    a   -  A                      uu a    u   g  ac 

Annotation confidence Not enough data

Genome context

chr2: 452086951-452087051 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ata-MIR169d

Mature ata-miR169d-5p

• Accession: MIMAT0037206
• Description: Aegilops tauschii ata-miR169d-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR169d-3p

• Accession: MIMAT0037207
• Description: Aegilops tauschii ata-miR169d-3p mature miRNA
• Sequence: 71 - GGCAAGUUGUCCUUGGCUACA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95