Stem-loop ata-MIR164b

Accession

MI0031712

Description

Aegilops tauschii ata-MIR164b precursor miRNA

Sequence

gcgcgcgaggUGGAGAAGCAGGGCACGUGCAuucauuuccagcucgguucccggcguccggccggcuggcuggcacgcaccgccccggccuuuccuggcuagugugucgcucgauccggccgugcgccggcggccggcccaugcaugCAUGUGCCUUUCUUCUCCACCgugcacaccu
..(.(((.((((((((((.(((((((((((((.(((.....((.(((((.(((((((.(((((((..(((.(((((((...(((..((.....)).)))..))))))))))....))))))).))))))).)))))))..))).))))))))))))).)))))))))).))).)....

Structure

--gc c   a          C             u   uucca  u     c       c       --cu   u       acc   cc  c 
    g gcg ggUGGAGAAG AGGGCACGUGCAu cau     gc cgguu ccggcgu cggccgg    ggc ggcacgc   gcc  gg c
    | ||| |||||||||| ||||||||||||| |||     || ||||| ||||||| |||||||    ||| |||||||   |||  || u
    c cgu CCACCUCUUC UUCCGUGUACgua gua     cg gccgg ggccgcg gccggcc    ucg cugugug   cgg  cc u
ucca a   g          U             c   ---cc  -     c       u       uagc   -       -au   -u  u 

Annotation confidence Not enough data

Genome context

chr1: 396523233-396523410 [+]

Mature ata-miR164b-5p

• Accession: MIMAT0037218
• Description: Aegilops tauschii ata-miR164b-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; Illumina [1]

Mature ata-miR164b-3p

• Accession: MIMAT0037219
• Description: Aegilops tauschii ata-miR164b-3p mature miRNA
• Sequence: 148 - CAUGUGCCUUUCUUCUCCACC - 168
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95