Stem-loop ata-MIR2275c

Accession

MI0031716

Description

Aegilops tauschii ata-MIR2275c precursor miRNA

Sequence

gcagaugaauuugAGUGUUGGAUGGGACCAAAUCuuacugccggguguggcaagauuugguuuccuccaauaucuuauguucauaugucagacgcuggguguuagcuacaagccuacaacaagugauaguuggauggacaccugggccugucucaagaaccuaaccucgcaagcugaaugugagauuuggauggaaccaaaucuucagcuauaguggcacaagaUUUGGUUUCCUCCAAUAUCUCAucuucaacug
.(((.((((..(((((((((((.(((((((((((((..(((((..(((((((((((((((((((.(((((.((((((((((((..(((..((.(.(((((.......(((.(((((((((........))))..........))))).))).......))))).).)))))...))))))))))))))))).)))))))))))))..)))))).))))).))))))))))))).))))))).))))..)))).)))

Structure

g   a    uu    -       U             ac     gg      --             c     u            -ua   ca  c c     guuagcu   a     ----------    aag 
 cag ugaa  ugAG UGUUGGA GGGACCAAAUCuu  ugccg  uguggc  aagauuugguuuc uccaa aucuuauguuca   ugu  ga g ugggu       aca gccua          caac   u
 ||| ||||  |||| ||||||| |||||||||||||  |||||  ||||||  ||||||||||||| ||||| ||||||||||||   |||  || | |||||       ||| |||||          ||||    
 guc acuu  ACUC AUAACCU CUUUGGUUUagaa  acggu  auaucg  uucuaaaccaagg agguu uagaguguaagu   acg  cu c aucca       ugu cgggu          guug   g
-   a    cu    U       C             -c     -g      ac             u     -            cga   --  c a     agaacuc   c     ccacagguag    aua 

Annotation confidence Not enough data

Genome context

chr7: 117539141-117539396 [-]

Mature ata-miR2275c-5p

• Accession: MIMAT0037226
• Description: Aegilops tauschii ata-miR2275c-5p mature miRNA
• Sequence: 14 - AGUGUUGGAUGGGACCAAAUC - 34
• Evidence: experimental ; Illumina [1]

Mature ata-miR2275c-3p

• Accession: MIMAT0037227
• Description: Aegilops tauschii ata-miR2275c-3p mature miRNA
• Sequence: 225 - UUUGGUUUCCUCCAAUAUCUCA - 246
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95