Stem-loop ata-MIR167d

Accession

MI0031719

Description

Aegilops tauschii ata-MIR167d precursor miRNA

Literature search

1 open access papers mention ata-MIR167d
(12 sentences)

Sequence

cacaaguagaUGAAGCUGCCAGCAUGAUCUGAaagcuagcuauguugcauguugaucuugauggucaucuccaucaagauugaagaccaugggcauggcugcaaucAGGUCAUGUGGCAGCUUCAUUuucucaugg
((..((.((((((((((((((.((((((((((..((.(((((((((.(((((((((((((((((......)))))))))))))....)))))))))))))))..)))))))))))))))))))))))).))..)).

Structure

-  ca  u              G          aa  u         g    ----             uc 
 ca  ag agaUGAAGCUGCCA CAUGAUCUGA  gc agcuauguu caug    uugaucuugaugg  a
 ||  || |||||||||||||| ||||||||||  || ||||||||| ||||    |||||||||||||   
 gu  uc uUUACUUCGACGGU GUACUGGAcu  cg ucgguacgg guac    aguuagaacuacc  u
g  ac  u              -          aa  -         -    caga             uc 

Annotation confidence Not enough data

Genome context

chr4: 348738068-348738203 [+]

Mature ata-miR167d-5p

• Accession: MIMAT0037232
• Description: Aegilops tauschii ata-miR167d-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUGA - 32
• Evidence: experimental ; Illumina [1]

Mature ata-miR167d-3p

• Accession: MIMAT0037233
• Description: Aegilops tauschii ata-miR167d-3p mature miRNA
• Sequence: 107 - AGGUCAUGUGGCAGCUUCAUU - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95