Stem-loop ata-MIR156e

Accession

MI0031722

Description

Aegilops tauschii ata-MIR156e precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156e
(38 sentences)

Sequence

ugcgaauggcUGACAGAAGAGAGUGAGCACacagcggcagacuacgucugguaaagaggacggauggaugcgaagagagagauagacgcagcugcuguugcguGCUCACCCUCUCUCUGUCAGCucucucuccg
...((..((((((((((((((.((((((((.(((((((((.((.((((((..........((........))..........)))))).))))))))))).)))))))).)))).))))))))).)..))....

Structure

-ugc  au -         -    A        a         a  a      guaaagagga  gau 
    ga  g gcUGACAGA AGAG GUGAGCAC cagcggcag cu cgucug          cg   g
    ||  | ||||||||| |||| |||||||| ||||||||| || ||||||          ||    
    cu  c CGACUGUCU UCUC CACUCGug guugucguc ga gcagau          gc   g
gccu  cu u         C    C        c         -  c      agagagagaa  gua 

Annotation confidence Not enough data

Genome context

chr5: 232754845-232754978 [-]

Mature ata-miR156e-5p

• Accession: MIMAT0037238
• Description: Aegilops tauschii ata-miR156e-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature ata-miR156e-3p

• Accession: MIMAT0037239
• Description: Aegilops tauschii ata-miR156e-3p mature miRNA
• Sequence: 104 - GCUCACCCUCUCUCUGUCAGC - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95