Stem-loop ata-MIR319

Accession

MI0031725

Description

Aegilops tauschii ata-MIR319 precursor miRNA

Literature search

1 open access papers mention ata-MIR319
(1 sentences)

Sequence

ucugugugagagagcucucuucaguccacucucagaugguuguaggguuuuauuAGCUGCCGAUUCAUUCAUUCAccuaccaagaaccaaggcggagcgcaugucuugguagccgACUGGAUGACGCGGGAGCUAAuauuuagcucgacguuguuugugguuggacugaagggugcucccuugcucgcagu
.(((((((((.((((.((((((((((((.((.((((((..(((.(((((.((((((((.(((..(((((((.((..(((((((((..((..(((...))).)))))))))))..)).)))))))..))).))))))))...))))).))).)))))).)).)))))))))))).)))).)))))..)))).

Structure

u    --     a    u            c  u      gu   a     --u        G   AU       U  Ac         ac  ag   g 
 cugu  gugag gagc cucuucagucca uc cagaug  ugu ggguu   uauuAGCU CCG  UCAUUCA UC  cuaccaaga  ca  gcg  
 ||||  ||||| |||| |||||||||||| || ||||||  ||| |||||   |||||||| |||  ||||||| ||  |||||||||  ||  ||| a
 gacg  cguuc cucg gggaagucaggu gg guuugu  gca cucga   auAAUCGA GGC  AGUAGGU Ag  gaugguucu  gu  cgc  
u    cu     c    u            u  u      -u   g     uuu        G   GC       C  cc         --  -a   g 

Annotation confidence Not enough data

Genome context

chr3: 198091819-198092009 [-]

Mature ata-miR319-5p

• Accession: MIMAT0037244
• Description: Aegilops tauschii ata-miR319-5p mature miRNA
• Sequence: 55 - AGCUGCCGAUUCAUUCAUUCA - 75
• Evidence: experimental ; Illumina [1]

Mature ata-miR319-3p

• Accession: MIMAT0037245
• Description: Aegilops tauschii ata-miR319-3p mature miRNA
• Sequence: 116 - ACUGGAUGACGCGGGAGCUAA - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95