Stem-loop ata-MIR171b

Accession

MI0031728

Description

Aegilops tauschii ata-MIR171b precursor miRNA

Sequence

ggagaguccgaUGUUGGCAUGGCUCAAUCAAAucgagugggcggcgaucgaggcgugaagauaugauuguuuaacucgaucUGAUUGAGCCGUGCCAAUAUCgcaagcuccu
((((..(.((((((((((((((((((((((.(((((((....((((((((...(.....)...))))))))..))))))).)))))))))))))))))))))).)..)))).

Structure

-    ag c                      A       gggc        agg g 
 ggag  u cgaUGUUGGCAUGGCUCAAUCA Aucgagu    ggcgaucg   c u
 ||||  | |||||||||||||||||||||| |||||||    ||||||||   | g
 ccuc  a gCUAUAACCGUGCCGAGUUAGU uagcuca    uuguuagu   g a
u    ga c                      c       --au        aua a 

Annotation confidence Not enough data

Genome context

chr4: 39471666-39471777 [+]

Mature ata-miR171b-5p

• Accession: MIMAT0037250
• Description: Aegilops tauschii ata-miR171b-5p mature miRNA
• Sequence: 12 - UGUUGGCAUGGCUCAAUCAAA - 32
• Evidence: experimental ; Illumina [1]

Mature ata-miR171b-3p

• Accession: MIMAT0037251
• Description: Aegilops tauschii ata-miR171b-3p mature miRNA
• Sequence: 82 - UGAUUGAGCCGUGCCAAUAUC - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95