Stem-loop api-mir-3055-5

Accession

MI0031735

Description

Acyrthosiphon pisum api-mir-3055-5 precursor miRNA

Sequence

aucguuuaucgcgaaccgcuaugugauuuaaaauuuaGCAGUUCGCGAUAAGCGGCCG
.(((((((((((((((.((((.((........)).)))).)))))))))))))))...

Structure

--a               c    u  gau 
   ucguuuaucgcgaac gcua gu   u
   ||||||||||||||| |||| ||    
   GGCGAAUAGCGCUUG CGau ua   u
GCC               A    u  aaa 

Annotation confidence Not enough data

Genome context

GL349643.1: 1806105-1806162 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from api-mir-3055-5

Mature api-miR-3055

• Accession: MIMAT0014798
• Description: Acyrthosiphon pisum api-miR-3055 mature miRNA
• Sequence: 38 - GCAGUUCGCGAUAAGCGGCCG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281