miRBase entry: crm-mir-51-2

Stem-loop crm-mir-51-2


Accession
MI0031744
Description
Caenorhabditis remanei crm-mir-51-2 precursor miRNA


Sequence

252621 reads, 2419.0 reads per million, 9 experiments
UACCCGUAGCUCCUAUCCAUGUUacuagcagauagagugaaCAUGGAAGUUGGUACAGGUGUA
((((.(((.(..((.(((((((((((.........)))).)))))))))..).))).))))..

Structure
--    C   G UC  A       -    agc 
  UACC GUA C  CU UCCAUGU Uacu   a
  |||| ||| |  || ||||||| ||||   g
  GUGG CAU G  GA AGGUACa guga   a
AU    A   G UU  -       a    gau 


Annotation confidence High
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Genome context
Crem_Contig20: 698366-698428 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from crm-mir-51-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature crm-miR-51-5p

Accession MIMAT0029636
Description Caenorhabditis remanei crm-miR-51-5p mature miRNA
Sequence 1 - UACCCGUAGCUCCUAUCCAUGUU - 23
Evidence experimental
Illumina [1]

Mature crm-miR-51-3p

Accession MIMAT0056899
Description Caenorhabditis remanei crm-miR-51-3p mature miRNA
Sequence 42 - CAUGGAAGUUGGUACAGGUGUA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23363624
    High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes
    "Shi Z, Montgomery TA, Qi Y, Ruvkun G"
    "Genome Res (2013) 23:497-508