Stem-loop rno-mir-340-2

Accession

MI0031764

Description

Rattus norvegicus rno-mir-340-2 precursor miRNA

Literature search

10 open access papers mention rno-mir-340-2
(66 sentences)

Sequence

315196 reads, 295 reads per million, 499 experiments

cacuuguacucggugugaUUAUAAAGCAAUGAGACUGAUUgucaugugucguuugugggaUCCGUCUCAGUUACUUUAUAGCCauaccugguaucuua
.....(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....

Structure

cacuu     c      a        -CAA      U    g     ug 
     guacu ggugug UUAUAAAG    UGAGAC GAUU ucaug  u
     ||||| |||||| ||||||||    |||||| |||| |||||  c
     uaugg ccauaC GAUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      C        AUUG      C    -     uu 

Annotation confidence Medium

Genome context

chr10: 35571755-35571852 [+]

Mature rno-miR-340-5p

• Accession: MIMAT0004650
• Description: Rattus norvegicus rno-miR-340-5p mature miRNA
• Sequence: 19 - UUAUAAAGCAAUGAGACUGAUU - 40
• Evidence: experimental ; cloned [2]

Mature rno-miR-340-3p

• Accession: MIMAT0000585
• Description: Rattus norvegicus rno-miR-340-3p mature miRNA
• Sequence: 61 - UCCGUCUCAGUUACUUUAUAGCC - 83
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365