Stem-loop rno-mir-1b

Accession

MI0031785

Description

Rattus norvegicus rno-mir-1b precursor miRNA

Literature search

9 open access papers mention rno-mir-1b
(29 sentences)

Sequence

352948 reads, 490.0 reads per million, 397 experiments

ccugcuugggacACAUACUUCUUUAUAUGCCCAUAuggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUUucaggcuagga
(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).))).

Structure

-   -        c                GC     ---   a 
 ccu gcuuggga ACAUACUUCUUUAUAU  CCAUA   ugg c
 ||| |||||||| ||||||||||||||||  |||||   ||| c
 gga cggacuUU UGUAUGAAGAAAUGUA  GGUau   auc u
a   u        A                -A     cga   g 

Annotation confidence High

Genome context

chr3: 175769716-175769800 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-1b

Mature rno-miR-1b-5p

• Accession: MIMAT0061441
• Description: Rattus norvegicus rno-miR-1b-5p mature miRNA
• Sequence: 13 - ACAUACUUCUUUAUAUGCCCAUA - 35
• Evidence: experimental ; Illumina [1]

Mature rno-miR-1b-3p

• Accession: MIMAT0037263
• Description: Rattus norvegicus rno-miR-1b-3p mature miRNA
• Sequence: 52 - UGGAAUGUAAAGAAGUAUGUAUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23799049
   Distinctive profile of IsomiR expression and novel microRNAs in rat heart left ventricle
   McGahon MK, Yarham JM, Daly A, Guduric-Fuchs J, Ferguson LJ, Simpson DA, Collins A
   PLoS One (2013) 8:e65809