miRBase entry: cja-let-7a-2

Stem-loop cja-let-7a-2

Accession

MI0031833

Description

Callithrix jacchus cja-let-7a-2 precursor miRNA

Sequence

ccgagaccgacugcccuuuggggUGAGGUAGUAGGUUGUAUAGUUuggggcucugcccuccuguggaguaacuaugcaaucuacugucuuuccugaaguggcuguaauaucugcgg
((((((...((.(((((((((((.(((((((((((((((((((((....(((((((......)))))))))))))))))))))))))))))))))))).))).))....))).)))

Structure

   -   -ccg  u   -        U                     uggg       cc 
ccg aga    ac gcc cuuugggg GAGGUAGUAGGUUGUAUAGUU    gcucugc  u
||| |||    || ||| |||||||| |||||||||||||||||||||    |||||||   
ggc ucu    ug cgg gaaguccu uucugucaucuaacguaucaa    ugaggug  c
   g   auaa  u   u        -                     ----       uc

Annotation confidence Not enough data

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Genome context

chr1: 205839703-205839818 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-let-7a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-let-7a

Accession	MIMAT0039324
Description	Callithrix jacchus cja-let-7a mature miRNA
Sequence	24 - UGAGGUAGUAGGUUGUAUAGUU - 45
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857

PubMed ID: 28640911
Evolution of microRNA in primates
McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
PLoS One (2017) 12:e0176596