Stem-loop cja-let-7g

Accession

MI0031835

Description

Callithrix jacchus cja-let-7g precursor miRNA

Literature search

1 open access papers mention cja-let-7g
(1 sentences)

Sequence

710129 reads, 67963.0 reads per million, 1 experiments

gcuccguuuccuuuugccugauuccaggcUGAGGUAGUAGUUUGUACAGUUugagggucuaugauaccacccgguacaggagauaaCUGUACAGGCCACUGCCUUGCcaggaacagugcgccagcugccaaauggggc
(((((((((.((..((((((.((((.(((.((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).))))))))))).))))))).)))..)).....)))))))))

Structure

         ----c  uu   -   a    a   U        A            ugagg    -a  a    a 
gcuccguuu     cu  ugc cug uucc ggc GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
|||||||||     ||  ||| ||| |||| ||| |||||||| ||||||||||||     ||||  || ||||  
cgggguaaa     ga  gcg gac aagg cCG UUCCGUCA CGGACAUGUCaa     uaga  ac augg c
         ccguc  cc   u   -    a   -        C            -----    gg  -    c 

Annotation confidence High

Genome context

ref|NC_071456.1|: 28566005-28566142 [-]

Mature cja-let-7g-5p

• Accession: MIMAT0039326
• Description: Callithrix jacchus cja-let-7g-5p mature miRNA
• Sequence: 30 - UGAGGUAGUAGUUUGUACAGUU - 51
• Evidence: experimental ; Illumina [1-2]

Mature cja-let-7g-3p

• Accession: MIMAT0061508
• Description: Callithrix jacchus cja-let-7g-3p mature miRNA
• Sequence: 87 - CUGUACAGGCCACUGCCUUGC - 107
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596