miRBase entry: cja-mir-513a-1

Stem-loop cja-mir-513a-1

Accession

MI0031843

Description

Callithrix jacchus cja-mir-513a-1 precursor miRNA

Sequence

gcgugcagugcccUUCACAAGGAGGUGUCAUUCAUguggacgaaaucaugaaucccaccuucuugagaagaguaauguacagc
(((((((.(((.((((.((((((((((..(((((((..........)))))))..)))))))))).)))).))).))))).))

Structure

  -     g   c    A          UC       ugga 
gc gugca ugc cUUC CAAGGAGGUG  AUUCAUg    c
|| ||||| ||| |||| ||||||||||  |||||||     
cg caugu aug gaag guucuuccac  uaaguac    g
  a     a   a    a          cc       uaaa

Annotation confidence Not enough data

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Genome context

chrX: 134342535-134342617 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-513a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-513a-5p

Accession	MIMAT0039333
Description	Callithrix jacchus cja-miR-513a-5p mature miRNA
Sequence	14 - UUCACAAGGAGGUGUCAUUCAU - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857